Set flags by default:
-Wmissing-prototypes
-Wmissing-declarations
-Wstrict-prototypes
-Wwrite-strings
-Wcast-align
-Wbad-function-cast
-Wformat-security
-Wno-format-nonliteral
-Wmissing-format-attribute
-funsigned-char
Fix minor compiler warnings for these new flags on gcc and clang.
As the logging modules are no longer threading modules, rename
them so they don't look like they are being registered as
threading modules.
Also, move the registration to the output.c which will handle
registration of the loggers.