diff --git a/src/log-filestore.c b/src/log-filestore.c
index 69b4a42de7..d0509540c0 100644
--- a/src/log-filestore.c
+++ b/src/log-filestore.c
@@ -584,6 +584,13 @@ static OutputInitResult LogFilestoreLogInitCtx(ConfNode *conf)
         }
     }
 
+    if (RunModeOutputFiledataEnabled()) {
+        SCLogWarning(SC_ERR_NOT_SUPPORTED,
+                "A file data logger is already enabled. Filestore (v1) "
+                "will not be enabled.");
+        return result;
+    }
+
     OutputCtx *output_ctx = SCCalloc(1, sizeof(OutputCtx));
     if (unlikely(output_ctx == NULL))
         return result;
diff --git a/src/output-filestore.c b/src/output-filestore.c
index ec82e5a810..d5eb2c9688 100644
--- a/src/output-filestore.c
+++ b/src/output-filestore.c
@@ -387,6 +387,13 @@ static OutputInitResult OutputFilestoreLogInitCtx(ConfNode *conf)
         return result;
     }
 
+    if (RunModeOutputFiledataEnabled()) {
+        SCLogWarning(SC_ERR_NOT_SUPPORTED,
+                "A file data logger is already enabled. Filestore (v2) "
+                "will not be enabled.");
+        return result;
+    }
+
     char log_directory[PATH_MAX] = "";
     GetLogDirectory(conf, log_directory, sizeof(log_directory));
     if (!InitFilestoreDirectory(log_directory)) {