diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
index 6447ea5b3..1da528408 100644
--- a/.github/workflows/main.yml
+++ b/.github/workflows/main.yml
@@ -28,17 +28,13 @@ jobs:
   linux-cross-appimage:
     name: 🐧 Linux Cross-Compiled AppImage
     uses: "./.github/workflows/linux-cross-appimage-build.yml"
-  linux-flatpak:
-    name: 📦 Linux Flatpak
-    needs: [linux-appimage, linux-cross-appimage]
-    uses: "./.github/workflows/linux-flatpak-build.yml"
   macos:
     name: 🍎 MacOS
     uses: "./.github/workflows/macos-build.yml"
 
   create-release:
     name: 📤 Create Release
-    needs: [windows, linux-appimage, linux-cross-appimage, linux-flatpak, macos]
+    needs: [windows, linux-appimage, linux-cross-appimage, macos]
     runs-on: ubuntu-22.04
     if: github.ref == 'refs/heads/master' || github.ref == 'refs/heads/dev'
     steps:
@@ -71,8 +67,6 @@ jobs:
             ./artifacts/linux-arm64-appimage/DuckStation-Mini-arm64.AppImage
             ./artifacts/linux-armhf-appimage/DuckStation-armhf.AppImage
             ./artifacts/linux-armhf-appimage/DuckStation-Mini-armhf.AppImage
-            ./artifacts/linux-flatpak-x86_64/duckstation-x86_64.flatpak
-            ./artifacts/linux-flatpak-aarch64/duckstation-aarch64.flatpak
             ./artifacts/macos/duckstation-mac-release.zip
 
       - name: Create Rolling Release
@@ -96,6 +90,4 @@ jobs:
             ./artifacts/linux-arm64-appimage/DuckStation-Mini-arm64.AppImage
             ./artifacts/linux-armhf-appimage/DuckStation-armhf.AppImage
             ./artifacts/linux-armhf-appimage/DuckStation-Mini-armhf.AppImage
-            ./artifacts/linux-flatpak-x86_64/duckstation-x86_64.flatpak
-            ./artifacts/linux-flatpak-aarch64/duckstation-aarch64.flatpak
             ./artifacts/macos/duckstation-mac-release.zip
diff --git a/README.md b/README.md
index aa6a83d94..1e97b38a1 100644
--- a/README.md
+++ b/README.md
@@ -94,7 +94,7 @@ Once downloaded and extracted, you can launch the emulator with `duckstation-qt-
 
 ### Linux
 
-DuckStation is provided for x86_64/ARM32/ARM64 Linux in AppImage (recommended) and Flatpak (not recommended) formats.
+DuckStation is provided for x86_64/ARM32/ARM64 Linux in AppImage formats.
 
 #### AppImage
 
@@ -103,21 +103,7 @@ The AppImages require a distribution equivalent to Ubuntu 22.04 or newer to run.
  - Go to https://github.com/stenzek/duckstation/releases/tag/latest, and download `duckstation-x64.AppImage`.
  - Run `chmod a+x` on the downloaded AppImage -- following this step, the AppImage can be run like a typical executable.
 
-#### Flatpak
-
-Due to various Flatpak limitations and Flathub randomly breaking regularly, **the Flatpak package is not recommended**. **We recommend that you use the AppImage instead.**
-
- - Go to https://github.com/stenzek/duckstation/releases/tag/latest, and download `duckstation-x64.flatpak`.
- - Run `flatpak install ./duckstation-x64.flatpak`.
-
-or, if you have FlatHub set up:
- - Run `flatpak install org.duckstation.DuckStation`.
-
-Use `flatpak run org.duckstation.DuckStation` to start, or select `DuckStation` in the launcher of your desktop environment. Follow the Setup Wizard to get started.
-
-**As of 2025/07/26, with the aforementioned issues and a lack of interest from users, the Flatpak package is deprecated. Future updates are not guaranteed.**
-
-To migrate your data from the Flatpak package to the AppImage, you can run the following command:
+If you were previously using the Flatpak package, to migrate your data from the Flatpak to the AppImage, you can run the following command:
 ```bash
 mv ~/.var/app/org.duckstation.DuckStation/config/duckstation ~/.local/share
 ```